Chunk #56 — Methods — Analysis of publicly available datasets — Single-cell RNA-seq data of microglia in Alzheimer’s disease (AD) mouse model

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scCODA is a Bayesian model for compositional single-cell data analysis.

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remaining cells based on the majority vote for the clustering result, i.e., when unassigned cells clustered predominantly with microglia 1, they were all assigned to microglia 1. The obtained proportions of microglia subpopulations are in accordance with the previously reported proportions. All analysis steps were carried out using Scanpy v.1.5.1.