We have recently shared all GeneMANIA data via a PSICQUIC webservice (17), which allows users to query millions of GeneMANIA functional interactions from their own software and scripts and multiple software that support the standard PSICQUIC molecular interaction query service (such as the Cytoscape PSICQUIC client app). It is accessible through http://webservice.baderlab.org:8180/psi-gm/webservices or through the PSICQUIC Registry: http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS
