Chunk #3 — Methods and Results

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An analysis of identical single-nucleotide polymorphisms genotyped by two different platforms.

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Because the allele designations are arbitrary, we decided to use the Illumina designations as our template. In the Affymetrix data, 50 of the 94 SNPs used the same allele designations as Illumina. For the remaining 44 SNPs, we relabeled the alleles to achieve comparability.