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Chunk #8 — Materials and Methods — Imputation

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A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.
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the threshold of 0.95, the genotypes of this SNP were then expressed as a corresponding allele pair for the following association analysis; otherwise, they were treated as missing genotypes. For SNPs that were directly genotyped, we used the direct genotypes rather than the imputed data. The imputed genotype data in Australians were checked for Mendelian errors by the program PEDCHECK [11].