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Chunk #50 — STAR*METHODS — METHOD DETAILS — Quality control and characterization of iPSC lines

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Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci.
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using the miRNeasy Mini Kit (QIAGEN) and quantified with the RNA 6000 Nano Kit (Agilent) on the Agilent Bioanalyzer system. 1 μg of RNA was used for cDNA synthesis using the High Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific). Quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) for pluripotency gene expression was performed using TaqMan reagents and SeV-specific probe-primer sets (Mr04269880_mr; Thermo Fisher Scientific). A subset of iPSC samples were cultured in T25 tissue culture flasks on MEF feeder cells and sent to Cell Line Genetics for cytogenetic analysis with G-banded karyotyping. An average of 20 cells per cell line were analyzed for chromosome integrity.