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Chunk #15 — Methods — Tissue segmentation

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Developmental change in regional brain structure over 7 months in early adolescence: comparison of approaches for longitudinal atlas-based parcellation.
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All bias-corrected and skull-stripped SPGR images were segmented into three tissue compartments (gray matter, white matter, CSF) using FSL's FAST tool (Zhang et al., 2001). As tissue priors to both initialize and guide the classification, we used the tissue probability maps provided with the SRI24 atlas, reformatted into subject SPGR space via the same transformations described above for the independent atlas-based parcellation.