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Chunk #11 — ONLINE METHODS — Associations between birth weight and seven confirmed loci in non-European samples of varying ancestry

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New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.
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Using 8 study samples of varying ancestry, we investigated the 7 loci, which showed genome-wide significant associations with birth weight in the combined meta-analysis of European discovery and follow-up studies. The 8 non-European studies were from East/Southeast Asia (Chinese and Filipino), Africa (African-American, Mandinka and Moroccan), Middle East (Arab, Turkish), and South America (Surinamese) (total n = 11,848; Supplementary Table 10). Samples were genotyped either by custom SNP assay (2 studies), CardioMetabochip (1 study) or genome-wide chip (5 studies). The index SNP from the European meta-analysis was taken forward as the index SNP for the non-European analyses, and associations with birth weight were analysed as described above. If the index SNP was unavailable, it was substituted with a closely correlated ancestry-specific proxy from the 1000 Genomes Pilot 1 YRI and JPT+CHB samples (released June 2010), which was found using SNAP (http://www.broadinstitute.org/mpg/snap/; see Supplementary Table 12). In the 5 studies with GWA data, we considered all SNPs within 250-kb either side of the European index SNP.