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Chunk #3 — Methods — Source and selection of cases

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Transcriptional changes common to human cocaine, cannabis and phencyclidine abuse.
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yes

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A series of 646 consecutive cases from the brain repository at the Clinical Brain Disorders Branch (NIMH IRP) were reviewed for evidence of drug abuse by either history or toxicology. Of the 138 cases identified, 50 cases were identified by a history of drug abuse, 25 cases by a positive toxicology test, and 63 cases were identified by both measures. Cases were excluded on the basis of co-morbid neurological or major psychiatric disorders, abnormal microscopic or macroscopic neuropathology, poor RNA quality, postmortem intervals (PMI) >72 hrs, or brain pH<6.0. A subset of 42 cases was retained, for which clinical case histories were compiled from chart records, medical examiner's files and structured interviews with next-of-kin to the extent possible. Controls (N = 30) were similarly selected from a well-characterized control cohort [17]. To limit the impact of confounds from any one control, each drug abuse case was matched to four controls that both individually and on average were the best matches for brain pH, PMI, age, gender, ethnicity and smoking history. Group mean demographic data are provided for drug abuse and