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Chunk #8 — Materials and methods — Genotyping

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Genome-wide association study identifies a potent locus associated with human opioid sensitivity.
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For additional genotyping of the rs2952768 and rs2254137 SNPs, the TaqMan allelic discrimination assay (Life Technologies, Carlsbad, CA, USA) was mostly conducted after total genomic DNA was extracted from whole-blood or oral mucosa samples using standard procedures. For samples that were not appropriately genotyped by this assay, direct sequencing was alternatively adopted to genotype the rs2952768 SNP. A total of 112, 203, 438, 228, 500 and 105 DNA samples from patients who underwent major abdominal surgery, patients with METH dependence/psychosis, patients with alcohol dependence, patients with eating disorders, healthy volunteer subjects and SMRI, respectively, were used to genotype the rs2952768 SNP. In addition, a total of 105 DNA samples from the post-mortem specimens for the expression analysis were used to genotype the rs2254137 SNP, although genotyping this SNP for other samples was not conducted because of the strength of the linkage disequilibrium (LD) with the rs2952768 SNP. The genotype distribution of the rs2952768 SNP in patients with METH dependence/psychosis, patients with alcohol dependence and patients with eating disorders is provided in Supplementary Table 9.