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Chunk #9 — Materials and methods — Histoblotting

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Developmental regulation of G protein-gated inwardly-rectifying K+ (GIRK/Kir3) channel subunits in the brain.
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To facilitate the identification of brain regions, structures and cell layers, adjacent cryostat sections were stained with cresyl violet at all developmental ages (Supporting Information Fig. S2). Digital images were acquired by scanning the nitrocellulose membranes using a desktop scanner (HP Scanjet 8300). Image analysis and processing were performed using the Adobe Photoshop software (Adobe Systems, San José, CA, USA) as described previously (Kopniczky et al., 2005). The same incubation time for each reagent was used for all antibodies. All of the images were processed with the same equipment in the same way to allow comparison of the intensity of grayscale images at different postnatal ages and in different brain regions on different days. The pixel density (arbitrary units) of immunoreactivity was measured using open circular cursors with a diameter of 0.10 mm. The cursors were placed in different brain regions identified based on the adjacent cresyl violet-stained sections (Kopnoczky et al., 2005). We used background correction to eliminate potential differences in optical densities across different sections in different experiments. The average of eight background determinations carried out near the