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Chunk #8 — Results — Expected relative accuracy of PGS in ancestry divergent populations

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Theoretical and empirical quantification of the accuracy of polygenic scores in ancestry divergent populations.
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Equation (1) shows that the relative accuracy (RA, relative to the accuracy in populations of same ancestry as Population 1) of PGS, defined as \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_2^2/R_1^2$$\end{document}R22/R12, can be discomposed as the product of multiple terms: (i) the squared genetic correlation (the correlation of effect sizes of causal variants) between populations, (ii) the ratio of heritability between populations, (iii) the ratio of squared covariances between PGS and y in both populations (approximated by the product of the first two terms on the right hand side of Eq. (1); Supplementary Note 1); and (iv) the ratio of variance of PGS in both populations. This decomposition allows us to distinguish and thus separately quantify the fraction of the RA that is attributable to differences in effect size distribution between populations (term (i) and term (ii) in the decomposition, including \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\rho _b^2$$\end{document}ρb2, \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$h_2^2$$\end{document}h22 and \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$h_1^2$$\end{document}h12) and the fraction attributable