All of the CMap data described in this report are available without restriction–to the research community including commercial entities. To enhance accessibility and utility, we developed a number of computational-visualization tools that enable users to interact with data at multiple levels (from raw to processed to normalized data), using methods optimized for technical and non-technical users (e.g., restful Application Programming Interfaces (APIs) for computational biologists and software engineers, and web applications for biologists). The most efficient method of accessing the data and tools is via the secure, cloud-based computing environment that we termed CLUE (Connectivity Map Linked User Environment), at https://clue.io. To enable computational researchers to reproduce our findings exactly, code is available at GitHub, and the entire preprocessing workflow is available as a container in the AWS Docker registry. Raw data are also available for download from GEO (accession GSE92742), but users will find it more efficient to interact with the data using CLUE.
