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Chunk #16 — Quality control

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Genome-wide association studies and the genetic dissection of complex traits.
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III [64], and can identify repeated samples, as well as unknown relations. If the study includes subjects with known familial relations, the analysis can compare expected and observed relations in the sample as a quality control metric. The popular software PLINK for the analysis of GWAS has a module for the estimation of IBS and IBD [51].