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Chunk #20 — MATERIALS, METHODS AND SAMPLES — Gene Expression Analysis — Statistical Analysis of Expression by rs1344706 Genotype

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Replication of association between schizophrenia and ZNF804A in the Irish Case-Control Study of Schizophrenia sample.
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For the allelic test, expression values were binned by rs1344706 allele and the means of the bins were then compared52. Each individual’s expression value is used twice: for homozygotes, twice in the same bin, for heterozygotes, once in each. As a result, the variation in the homozygotes may be less than that in heterozygotes, and we therefore compare the two group means using the unpaired t-test with Welch’s correction to account for possible heteroscedastic variances.