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Chunk #62 — Online Methods — Standardize the covariance matrices.

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Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions.
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Since eq. 3 uses the same grid of scaling factors for each covariance matrix Uk, we standardize the matrices Uk so that they are similar in scale. Specifically, for each k, we divide all elements Uk by the maximum diagonal element of Uk so that the maximum diagonal element of the rescaled matrix is 1. These rescaled matrices define U^ in Step 1a of mash.