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Chunk #20 — Results — Performance of allelic scores in the WTCCC

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Mining the human phenome using allelic scores that index biological intermediates.
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bipolar disorder. These genome-wide scores were also very strongly related to risk of type 2 diabetes, more so than the score constructed from the known regions only. This is expected if the relationship between BMI and type 2 diabetes is causal, since the known variants explained less variation in the BMI intermediate than the genome-wide allelic scores. The fact that the genome-wide score with the known regions removed also showed strong association with type 2 diabetes shows that these associations do not solely reflect the effect of variants within FTO and other BMI genes known to be reliably associated with type 2 diabetes.