Chunk #67 — Online Methods — 2. Chromatin state learning — 2.3 State labels, interpretation and mnemonics

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Integrative analysis of 111 reference human epigenomes.

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In order to assign biologically meaningful mnemonics to the states, we used the ChromHMM package to compute the overlap and neighborhood enrichments of each state relative to various types of functional annotations (Fig. 4b-c,f, Extended Data 2b,c, Fig. S2).