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Chunk #14 — Methods

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Genome-wide scan for self-rating of the effects of alcohol in American Indians.
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DNA was isolated from whole blood using an automated DNA extraction procedure, genotyping was done as previously described (Wilhelmsen et al., 2003). Genotypes were determined for a panel of 791 autosomal microsatellite polymorphisms (Weber and May, 1989) using fluorescently labeled PCR primers under conditions recommended by the manufacturer (HD5 version 2.0; Applied Biosystems, Foster City, CA). The HD5 panel set has an average marker-to-marker distance of 4.6 cM, and an average heterozygosity of greater than 77% in a Caucasian population. Allele frequencies observed in the unrelated founders were used for linkage analysis. Gender and age accounted for greater than 5% of the phenotypic variance for the phenotype. Therefore, age and gender were included as covariates in the analyses.