loading for each Biological IC defined their own particular subcluster. To do this, we clustered the cells across a range of the parameters k (number of nearest neighbors used in SNN generation) and r (resolution parameter in SLM), inspected the resulting clusters for enrichment for specific ICs, and selected a specific pair of parameters k and r that maximized the 1:1 correspondence between IC and subcluster (Figure S2J,K).
