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Chunk #52 — Online Methods — Variant Classification

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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
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Note that here the terms are inverted since we want to be confident that alteration was not present. For δN we set a threshold of 10, which is higher than the threshold for δT because we want to be more confident in our variant classification as misclassified germline events will quickly appear to be significant in downstream somatic analysis due to their elevated population frequency at recurrent sites as compared to real somatic events.