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Chunk #40 — Methods — Number of trait-specific causal variants (MiXeR analysis)

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Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder.
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We applied MiXeR version 1.3 (ref. 15) to quantify the polygenicity of OCD (that is, estimate the total number of trait-influencing genetic variants). MiXeR fits a Gaussian mixture model assuming that common genetic effects on a trait are a mixture of causal variants and noncausal variants. Polygenicity is reported as the number of causal variants that explain 90% of SNP heritability of OCD (to avoid extrapolating model parameters into the area of infinitesimally small effects).