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Chunk #2 — Introduction

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Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS.
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to sequencing [6]–[8]. The key issue in this controversy is whether the genetic risk factors not yet discovered are largely similar in frequency and effect size to those that have been discovered using GWAS (i.e. common alleles with low risk) or are, instead, rarer alleles that would be best identified through sequencing studies.