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Chunk #14 — Materials and Methods — Power of a GWAS meta-analysis under heterogeneity

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Meta-GWAS Accuracy and Power (MetaGAP) Calculator Shows that Hiding Heritability Is Partially Due to Imperfect Genetic Correlations across Studies.
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effect follows a degenerate distribution with all probability mass at zero, whereas under the alternative hypothesis a SNP effect follows a distribution with mean zero and a finite non-zero variance. Bearing in mind that we can write a meta-analysis Z statistic as a weighted average of true effects across studies and noise terms, the null hypothesis leads to a Z statistic with a mean equal to zero and a variance equal to one, whereas the alternative hypothesis does not lead to a non-zero mean in the Z statistic, but rather to excess variation (i.e., a variance larger than one).