paperKB
coga / coga-kb
Processing
Help
Sign in

Chunk #8 — 2. Patients and Methods — 2.3 Selection of CNR1 SNPs and Genotyping

Source
Cannabinoid receptor 1 gene polymorphisms and marijuana misuse interactions on white matter and cognitive deficits in schizophrenia.
Embedded
yes

Text

tSNPs. Illumina utilizes their proprietary GenCall data analysis software to ascertain quality and reliability of the genotypes called. A 10% GenCall score (i.e. the 10th percentile rank for all GenCall scores of the study samples at a given locus) greater than 0.7 is considered accurate and high-quality genotype data. The mean 10% GenCall scores for the 12 CNR1 tSNPs is 0.89 (SD=0.05; Range=0.80 – 0.96).