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Chunk #11 — Materials and methods — Genetic risk sum score

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Genetic risk sum score comprised of common polygenic variation is associated with body mass index.
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Under an additive model, 56 variants were used to construct the GRSS. The use of an additive model was chosen as specific non-additive effects have yet to be associated and confirmed in the literature. The GRSS was calculated by summation of the number of risk alleles across the 56 variants divided by the number of SNPs in the score to obtain an average number of risk alleles per locus. GRSS were calculated using the profile option in PLINK. If SNP information was missing in an individual then the scoring routine imputed expected values based on sample allele frequency. R version 2.20.0 was used to fit linear regression models using standard covariates and GRSS as predictors with BMI as the outcome variable. To facilitate interpretation ofeffects in linear models independent variables were centered.