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Chunk #18 — Materials and Methods — Bioinformatic Analysis

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PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites.
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The two sequencing runs, each with five biological replicates, were analyzed together by fitting the number of reads for 10 pairs of variant and reference alleles (five from each experiment). The different sequencing runs were included as an additional covariate. The statistical analysis was performed as described above.