Our data suggest that mild repeated alcohol exposures have lasting consequences on the transcript isoforms expressed in Drosophila. Importantly, altered isoform transcription occurred in a diversity of genes, including transcription factors like Stat92E, which could have long-lasting and broad effects on transcription within memory circuits (Copf et al. 2011). As alcohol alone did not induce expression of alternative transcripts of Stat92E, this suggests that splicing of this gene might occur due to memory formation. Since our analysis was restricted to neurons necessary for memories associated with punishment or reward, it is possible that even small effects could have widespread consequences for subsequent memory formation and vulnerability to dependence on drugs of abuse. Uncovering whether this is a broader phenomenon will require identifying lasting transcriptional events that occur in the same cell types across a diversity of memory and drug exposure paradigms.