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Chunk #38 — Discussion

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Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies.
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Through the analysis of this observational study, we experienced different limitations. For example, we had expected that cause of death would greatly influence both RIN-based RNA quality and %P-based array quality, but cause of death only explained 1.9% of variation in RIN and we did not find any significant relationship with %P. It may be that cause of death is an imperfect reflection of the true medical and drug treatment history of the individual, and that access to that history, were it available, would reveal other factors of greater relevance. Likewise, in the range of 28–114 h PMI did not affect on either RIN or %P, nor could we see a loss of RIN-based RNA quality over the 1–5 h range. It remains possible that there may be selective loss of RNA within an hour because the half-life of some mRNA species has been reported to be as short as 15 min, while others may be as long as 22 days depending on the tissue type and storage conditions (Ross 1995; Barrachina et al. 2006; Bahar et al. 2007; Beach