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Chunk #94 — Methods — Expression quantitative trait loci (eQTL) — Functional annotation of eQTLs — Overlap with the GWAS catalogue

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Common genetic variation drives molecular heterogeneity in human iPSCs.
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Lastly, we parsed each disease variant position for overlap with iPSC eQTLs, again considering lead variants and their high-LD proxies for each tissue as follows. We report all disease variants that were tagged by iPSC eQTLs (lead or proxy) and the eGene(s) regulated by the eQTL lead/proxy (Supplementary Table 6a). We additionally report a subset of these variants that are exact matches with iPSC lead eQTL variants and highlight the number of high-LD proxies (r2 > 0.8) each variant has (Supplementary Table 6b).