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Chunk #16 — Materials and Methods — Bioinformatic Analysis

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PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites.
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The raw reads were aligned to the reference library containing the 200 test sequences (TMAP- Ion Torrent Suite®, Thermo Fisher Scientific, Waltham, MA, United States). The reads that aligned to the reference library were filtered to retain reads with a mapping quality greater than 20 and further filtered to include only those sequences with perfect barcodes at both ends.