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Chunk #7 — MATERIALS AND METHODS — Genotyping, quality control and imputation

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Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.
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DNA extraction and genotyping were performed on saliva samples by CLIA-certified and CAP-accredited clinical laboratories of Laboratory Corporation of America. Samples were genotyped on 23andMe custom genotyping array platforms (Illumina HumanHap550+ Bead chip V1 V2, OmniExpress+ Bead chip V3, Custom array V4). Quality control of genetic variants and imputation were performed by 23andMe (see Supplementary Table 3). A full description of the methods have been reported elsewhere (Hyde et al. 2016; Lo et al. 2016).