Chunk #12 — Methods — Application of methods — MV-SNPTEST

Source

A comparison of multivariate genome-wide association methods.

Embedded

yes

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The command used to perform additive association testing with MV-SNPTEST [20] (https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html#multiple_phenotype_tests) was: snptest -data geno.gen pheno.sample -o output -bayesian 1 -method expected -mpheno T1 T2 T3 -prior_qt_mean_b 0 -prior_qt_V_b 0.02 -prior_mqt_c 4 -prior_mqt_Q 6.