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Chunk #45 — Materials and Methods — GPA probabilistic model

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GPA: a statistical approach to prioritizing GWAS results by integrating pleiotropy and annotation.
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two-groups model: (4)where the p-values from the null group are from the Uniform distribution on [0,1], denoted as , and the p-values from the non-null group are from the Beta distribution with parameters (), where . We put the constraint to model that a smaller p-value is more likely than a larger p-value when it is from the non-null group [47].