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Chunk #47 — Discussion

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Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data.
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Consistent with previous results, we find the PGM introduces coverage bias against low and high G+C% sequences, with evidence suggesting that attempts to sequence high G+C% organisms (greater than 65% G+C%) may even fail during the PGM library preparation. Although the mechanisms behind these failed libraries are not evaluated here, we anticipate they will bias representation of high G+C% organisms in metagenomes and metatranscriptomes.