Anatomic brain MRI measures show high individual variability. The high variability and substantial overlap of most measures for most groups being compared has profound implications for the diagnostic utility of psychiatric neuroimaging and the sensitivity/specificity in using neuroimaging to make predictions about behavior or ability in a particular individual. For example, although group average anatomic MRI differences have been reported for all major psychiatric disorders MRI is not currently indicated for the routine diagnosis of any. Going from group average differences to individual use is one of the preeminent challenges of neuroimaging. A more immediate use of neuroimaging may be to provide endophenotypes, biologic markers that are intermediate between genes and behavior. Neuroimaging endophenotypes have the potential to define biologically meaningful subtypes of disorders that may respond to different interventions.