Brain development depends on finely controlled expression of genes. Developmental changes in gene expression are well established in animal models, but data are rare in humans and even rarer in the pediatric population. Genome-wide association studies (GWAS) use a non-hypothesis-driven approach to interrogate genetic variants across the whole genome. To our knowledge, only one study to date used this approach in a healthy pediatric population and showed that the genotype for DOK5, encoding for a protein mediating neurite outgrowth and activation of the MAP kinase pathway, modifies the activation of the amygdala during face processing in children (9–18 years, (Liu et al. 2010))Other studies examined candidate genes based on prior evidence and biological plausibility. Most of these studies showed genetic influences on brain morphometry and brain connectivity (i.e. fMRI after a specific task), while only three studies reported on the relationship between genetic variants and DTI measures (Pacheco et al. 2009; Thomason et al. 2010; Sundram et al. 2010).