paperKB
coga / coga-kb
Processing
Help
Sign in

Chunk #6 — MATERIALS AND METHODS — Orthology assignment and evolutionary appearance

Source
Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes.
Embedded
yes

Text

We derive the orthology relationships from the eggNOG database (32). Based on these relationships, we assign the evolutionary appearance of each cancer gene, defined as the deepest branch of the tree of life where an ortholog for that gene can be found. Overall, we divide the tree of life into seven main branches: Last Common Ancestor (LCA), which identifies the ancestral cellular organism, Eukaryotes, Opisthokonts, Metazoans, Vertebrates, Mammals and Primates. For example, a human gene whose orthologs are traceable in prokaryotes is considered to have appeared in the LCA, while a human gene with orthologs only in fungi and metazoans, but not in plants, is assumed to be born with Opisthokonts.