After demultiplexing, seven samples from the HT assay and twenty-three samples from the multiome assay with either no genotype info available or less than 100 cell barcodes assigned were removed from all further analyses. Raw data from the barcodes from these samples are publicly available, see “Data availability,” below. These samples—163 from the HT experiments, and 161 from multiome—were used for all the following processing and analyses until the filtering step detailed in “Sample filtering,” below.
