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Chunk #23 — Results

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SNP-based pathway enrichment analysis for genome-wide association studies.
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depression pathway and long-term potentiation pathway were reported in a recent study where pathways were overrepresented by genes disrupted by copy number variants in schizophrenia cases [36]. Genes in the focal adhesion pathway are principally involved in the biological processes for synaptic transmission and cell adhesion [37]. In addition, arrhythmogenic right ventricular cardiomyopathy (ARVC) pathway is related to cardiovascular disease, which supports the previous study that patients with schizophrenia had higher rates of cardiovascular disease and mortality compared with the general population [38,39]. We took a further investigation of gene intersections in the remaining two non-schizophrenia specific pathways. We found the calcium signalling pathway shared 40 (24%) genes with long-term potentiation pathway, while vascular smooth muscle contraction shared 40(37%) genes with long-term depression pathway; the same genes implicated in different pathways might be a reason for their enrichment in our study.