Chunk #61 — Methods — Analysis of publicly available datasets — Single-cell RNA-seq data of small intestinal epithelial cells infected with different bacteria
Annotated single-cell transcriptomics data of epithelial cells from the small intestine of mice infected with three different bacterial conditions were downloaded from Single Cell Portal (accession ID SCP44). The data consisted of a control group of four mice (3,240 cells total) and three groups of two mice each, measured after 2 days for Salmonella (1,770 cells total), as well as three (2,121 cells total) and ten days (2,711 cells total) after H. polygyrus infection, respectively.
