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Chunk #60 — Methods — Gene expression analysis

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Establishment of human iPSC-based models for the study and targeting of glioma initiating cells.
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variable was standardized by subtraction of its mean value and division by its standard deviation across all samples. One p53KD-Ras/EGFR/SrciNPC outlier sample was removed from further analysis. Differential expression analysis was carried out using ANOVA in Qlucore Omics Explorer 2.3. Probes with a q value <0.01 were considered differentially expressed. The differentially expressed probes were then clustered using hierarchical clustering and only the probes (n=463) that displayed high correlation between the GTICs and p53KD-Ras/EGFR/SrciNPC samples were displayed in the heatmap. Pathways analysis was performed using IPA software (Ingenuity Systems, build v. 308606 M, content v. 18488943).