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Chunk #20 — Materials and Methods — Genome-wide association scan genotyping

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Genome-wide association scan in HIV-1-infected individuals identifying variants influencing disease course.
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Genotyping was performed according to the Infinium II protocol from Illumina (Illumina, San Diego, USA) [29]. Samples were only included if a minimum 95% call rate was observed for the sample in BeadStudio 3.1 data analysis software (Illumina Inc, San Diego, USA). Three samples that had a call rate below 95% were repeated using a new DNA aliquot and analyzed successfully.