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Chunk #58 — Materials and Methods — Modularity analysis

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Functional brain networks develop from a "local to distributed" organization.
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to split the nodes into two subgraphs, and Q is calculated. Second, nodes are swapped individually between the two subgraphs to see if an increase in Q can be found. Once a maximal Q is found from these swaps, the process is repeated on the subgraphs. At any point in this process, if the matrix has no positive eigenvalues, or if a proposed split does not increase Q, the subgraph is set aside, and defines a community. To detect communities in our networks over a range of ages, we used the sliding boxcar group average correlation matrices described above in “Generation of average group correlation matrices across development.” With weights retained, the modularity optimization algorithm was applied to each matrix along the sliding boxcar. A range of thresholds was explored to define connections for these calculations (see Figure 4 and Figure S1). Any particular threshold did not change the conclusions presented in the main manuscript. A threshold of 0.10 was chosen to display in the main manuscript because it balances two principles: (1) eliminating a multitude of weak correlations, which may obscure more physiologically relevant correlations, and (2) retaining high graph connectedness, so that communities arise from partitioning and not