Chunk #50 — Methods — Running MAGMA

Source

A computational tool (H-MAGMA) for improved prediction of brain-disorder risk genes by incorporating brain chromatin interaction profiles.

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For both H-MAGMA and cMAGMA, we used the MAGMA analysis pipeline as the default setting: magma_v1.07b/magma --bfile g1000_eur –pval <GWAS summary statistics> use=rsid,p ncol=N --gene-annot <MAGMA input annotation file> --out <output file>