paperKB
coga / coga-kb
Processing
Help
Sign in

Chunk #12 — Materials and methods — Genotyping, imputation and quality control (QC)

Source
Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.
Embedded
yes

Text

After applying QC filters and phenotypic criteria, the Yale-Penn discovery sample included in analyses contained 1,307 AA and 2,340 EA OD cases and 974 AA and 768 EA opioid-exposed controls and 3,554 AA and 2,712 EA CD cases and 478 AA and 915 cocaine-exposed controls. The CATS replication sample contained 1,217 EA OD cases and 88 opioid-exposed controls. Demographic information and mean TD or censoring in the three cohorts are shown in Tables 1 (CD) and 2 (OD). The COGA replication sample included 144 AA and 334 EA OD cases and 354 AA and 1,305 opioid-exposed controls, 572 AA and 759 EA CD cases and 416 AA and 1,620 EA cocaine-exposed controls.