lincRNAs). In addition, we have included a catalog of spliced lincRNAs that are expressed at FPKM>1 in at least one dataset (4,576 lincRNAs, Dataset S4), of which 61% are exclusively composed of de novo assembled transcripts discovered in this study. We have also compiled a catalog of lincRNAs expressed at FPKM>1 in at least two datasets (26,455 lincRNAs, Dataset S5), of which 97% are exclusively de novo assembled transcripts discovered here. Additionally, an alternative lincRNA catalog containing only those lincRNAs expressed significantly higher than randomly sampled intergenic regions (see Methods) were included (5,267 lincRNAs, Datasets S6, S7). Furthermore, as an additional resource we provide the expression level (FPKM and raw RNA-seq read counts) of all lincRNAs (in Dataset S2) and RefSeq protein coding genes across all 127 RNA-seq datasets (Dataset S8).
