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Chunk #27 — Several areas for improving gene set analysis of GWAS

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Gene set analysis of genome-wide association studies: methodological issues and perspectives.
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1) Improve statistical power for detecting disease associated gene sets. Nearly all current methods treat every gene equally when constructing gene set statistics, a more powerful strategy would involve weighing genes and SNPs within a gene set differentially by leveraging a priori biological information, such as that from expression quantitative trait loci (eQTL) studies [16] or network topology [26,63–66].