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Chunk #52 — THEORETICAL DERIVATIONS — IMPACT OF LD ON DISEASE PARAMETERS — Interaction model

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Disease model distortion in association studies.
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Like the multiplicative model, the interaction model we use is naturally defined for haplotypes as well as genotypes and we again turn to the haplotype setting as a simplifying device. Let SNPs A and A′ be causal and SNPs B and B′ be their tag SNPs, respectively. Define the following disease penetrances: