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Chunk #5 — Results — Expected relative accuracy of PGS in ancestry divergent populations

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Theoretical and empirical quantification of the accuracy of polygenic scores in ancestry divergent populations.
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We derived the expected accuracy of such PGS in Population 2 (denoted \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_2^2$$\end{document}R22) as function of the expected accuracy in a sample of same ancestry as Population 1 (denoted \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_1^2$$\end{document}R12), the minor allele frequencies (MAF) pk,1 and pk,2 at the kth PGS-SNP (i.e. SNPs included in the PGS) in Populations 1 and 2, respectively, the LD between the jth causal SNP and the kth PGS-SNP in Population 1 and 2, respectively (denoted rjk,1 and rjk,2), the heritabilities \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$h_1^2$$\end{document}h12 and \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$h_2^2$$\end{document}h22 of y in Populations 1 and 2, respectively, and the correlation ρb of causal SNP effects between Population 1 and Population 2. It is worth underlining here that direct attempts to predict \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_1^2$$\end{document}R12 or \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_2^2$$\end{document}R22 are challenging as they require prior knowledge of the number of