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Chunk #18 — Methods — BeadChip genotyping

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A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing.
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Infinium iSelect 24 × 1 HTS Custom Beadchip Kit (GSAsharedCUSTOM_20018389_A2) genotyping was performed using 50 ng of genomic DNA. Microarray fluorescence was scanned using the Illumina iScan system, and the genotype calling was executed using the Illumina GenomeStudio Genotyping Module software (Illumina, USA). No imputation was implemented, and only variants successfully genotyped on the specified array were used in the analysis.